IL_28ZX_060
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 28ZX|1|S2|C|1215, 28ZX|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28ZX_060 not in the Motif Atlas
- Homologous match to IL_9H3G_212
- Geometric discrepancy: 0.0822
- The information below is about IL_9H3G_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.15
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 24
Unit IDs
28ZX|1|S2|A|1214
28ZX|1|S2|C|1215
28ZX|1|S2|C|1216
28ZX|1|S2|A|1217
*
28ZX|1|S2|U|1681
28ZX|1|S2|C|1682
28ZX|1|S2|C|1683
28ZX|1|S2|C|1684
28ZX|1|S2|U|1685
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain G
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sc
- 40S ribosomal protein S28
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