IL_2AAR_001

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_001 not in the Motif Atlas

Homologous match to IL_7A0S_001

Geometric discrepancy: 0.1018

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|G|24
2AAR|1|0|U|25
2AAR|1|0|G|26
2AAR|1|0|G|27
2AAR|1|0|A|28
2AAR|1|0|U|29
2AAR|1|0|G|30
*
2AAR|1|0|C|520
2AAR|1|0|U|521
2AAR|1|0|G|522
2AAR|1|0|A|523
2AAR|1|0|A|524
2AAR|1|0|A|525
2AAR|1|0|C|526

Current chains

Chain 0

23S ribosomal RNA

Nearby chains