IL_2AAR_008

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_008 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1138

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2AAR|1|0|G|165
2AAR|1|0|G|166
2AAR|1|0|A|167
2AAR|1|0|A|168
2AAR|1|0|C|169
2AAR|1|0|U|170
2AAR|1|0|G|171
*
2AAR|1|0|C|178
2AAR|1|0|U|179
2AAR|1|0|C|180
2AAR|1|0|A|181
2AAR|1|0|G|182
2AAR|1|0|U|183
2AAR|1|0|A|184
2AAR|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains