IL_2AAR_020

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_020 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1271

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2AAR|1|0|U|716
2AAR|1|0|G|717
2AAR|1|0|A|718
2AAR|1|0|A|719
2AAR|1|0|A|720
2AAR|1|0|C|721
*
2AAR|1|0|G|736
2AAR|1|0|C|737
2AAR|1|0|G|738
2AAR|1|0|G|739
2AAR|1|0|A|740
2AAR|1|0|G|741

Current chains

Chain 0

23S ribosomal RNA

Nearby chains