IL_2AAR_037

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

2AAR|1|0|C|1152, 2AAR|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_037 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2862

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|C|1029
2AAR|1|0|U|1030
2AAR|1|0|C|1031
2AAR|1|0|A|1032
2AAR|1|0|G|1033
2AAR|1|0|U|1034
2AAR|1|0|G|1035
*
2AAR|1|0|C|1150
2AAR|1|0|U|1151
2AAR|1|0|C|1152
2AAR|1|0|A|1153
2AAR|1|0|A|1154
2AAR|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains