IL_2AAR_066

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

2AAR|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_066 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.1409

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

2AAR|1|0|A|1686
2AAR|1|0|C|1687
2AAR|1|0|U|1688
2AAR|1|0|U|1689
2AAR|1|0|U|1690
2AAR|1|0|G|1691
*
2AAR|1|0|C|1973
2AAR|1|0|U|1974
2AAR|1|0|G|1975
2AAR|1|0|U|1976

Current chains

Chain 0

23S ribosomal RNA

Nearby chains