IL_2AAR_067

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

2AAR|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_067 not in the Motif Atlas

Geometric match to IL_7A0S_063

Geometric discrepancy: 0.1477

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|C|1703
2AAR|1|0|G|1704
2AAR|1|0|U|1705
2AAR|1|0|A|1706
2AAR|1|0|A|1707
2AAR|1|0|C|1708
*
2AAR|1|0|G|1713
2AAR|1|0|A|1714
2AAR|1|0|A|1715
2AAR|1|0|G|1716
2AAR|1|0|A|1717
2AAR|1|0|A|1718
2AAR|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains