IL_2AAR_071

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

2AAR|1|0|G|1882, 2AAR|1|0|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_071 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2573

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

2AAR|1|0|U|1833
2AAR|1|0|G|1834
*
2AAR|1|0|U|1881
2AAR|1|0|G|1882
2AAR|1|0|A|1883
2AAR|1|0|A|1884

Current chains

Chain 0

23S ribosomal RNA

Nearby chains