IL_2AAR_100

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

2AAR|1|0|G|2555, 2AAR|1|0|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_100 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1445

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

2AAR|1|0|C|2489
2AAR|1|0|U|2490
2AAR|1|0|C|2491
*
2AAR|1|0|G|2553
2AAR|1|0|C|2554
2AAR|1|0|G|2555
2AAR|1|0|A|2556
2AAR|1|0|G|2557

Current chains

Chain 0

23S ribosomal RNA

Nearby chains