IL_2AAR_104

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

2AAR|1|0|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_104 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.1957

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|U|2615
2AAR|1|0|U|2616
2AAR|1|0|G|2617
2AAR|1|0|A|2618
2AAR|1|0|G|2619
*
2AAR|1|0|C|2754
2AAR|1|0|A|2755
2AAR|1|0|A|2756
2AAR|1|0|G|2757
2AAR|1|0|A|2758
2AAR|1|0|U|2759
2AAR|1|0|G|2760
2AAR|1|0|A|2761
2AAR|1|0|G|2762

Current chains

Chain 0

23S ribosomal RNA

Nearby chains