IL_2AAR_105

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

2AAR|1|0|G|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_105 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.2168

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|C|2631
2AAR|1|0|U|2632
2AAR|1|0|A|2633
2AAR|1|0|G|2634
2AAR|1|0|U|2635
2AAR|1|0|A|2636
2AAR|1|0|C|2637
*
2AAR|1|0|G|2642
2AAR|1|0|G|2643
2AAR|1|0|A|2644
2AAR|1|0|C|2645
2AAR|1|0|C|2646
2AAR|1|0|G|2647

Current chains

Chain 0

23S ribosomal RNA

Nearby chains