IL_2AAR_116

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

2AAR|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_116 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2291

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2AAR|1|0|G|1008
2AAR|1|0|C|1009
2AAR|1|0|U|1010
2AAR|1|0|A|1011
2AAR|1|0|A|1012
2AAR|1|0|G|1013
*
2AAR|1|0|C|1164
2AAR|1|0|G|1165
2AAR|1|0|A|1166
2AAR|1|0|A|1167
2AAR|1|0|G|1168
2AAR|1|0|C|1169

Current chains

Chain 0

23S ribosomal RNA

Nearby chains