IL_2AAR_118

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAUGGA*UUCUAAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_118 not in the Motif Atlas

Geometric match to IL_5TBW_088

Geometric discrepancy: 0.3771

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

2AAR|1|0|U|1431
2AAR|1|0|G|1432
2AAR|1|0|A|1433
2AAR|1|0|U|1434
2AAR|1|0|G|1435
2AAR|1|0|G|1436
2AAR|1|0|A|1437
*
2AAR|1|0|U|1591
2AAR|1|0|U|1592
2AAR|1|0|C|1593
2AAR|1|0|U|1594
2AAR|1|0|A|1595
2AAR|1|0|A|1596
2AAR|1|0|A|1597

Current chains

Chain 0

23S ribosomal RNA

Nearby chains