IL_2AAR_121

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUUG*UUAG

Length

9 nucleotides

Bulged bases

2AAR|1|0|U|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_121 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.5124

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

2AAR|1|0|U|857
2AAR|1|0|G|858
2AAR|1|0|U|859
2AAR|1|0|U|860
2AAR|1|0|G|861
*
2AAR|1|0|U|942
2AAR|1|0|U|943
2AAR|1|0|A|944
2AAR|1|0|G|945

Current chains

Chain 0

23S ribosomal RNA

Nearby chains