IL_2AAR_123

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAC*GG

Length

5 nucleotides

Bulged bases

2AAR|1|0|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_123 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.5403

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

2AAR|1|0|U|2380
2AAR|1|0|A|2381
2AAR|1|0|C|2382
*
2AAR|1|0|G|2393
2AAR|1|0|G|2394

Current chains

Chain 0

23S ribosomal RNA

Nearby chains