IL_2D3O_005
3D structure
- PDB id
- 2D3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- ACGAG*CUUUGACU
- Length
- 13 nucleotides
- Bulged bases
- 2D3O|1|0|U|99
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2D3O_005 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.4553
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
2D3O|1|0|A|80
2D3O|1|0|C|81
2D3O|1|0|G|82
2D3O|1|0|A|83
2D3O|1|0|G|84
*
2D3O|1|0|C|96
2D3O|1|0|U|97
2D3O|1|0|U|98
2D3O|1|0|U|99
2D3O|1|0|G|100
2D3O|1|0|A|101
2D3O|1|0|C|102
2D3O|1|0|U|103
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain S
- 50S RIBOSOMAL PROTEIN L24
- Chain W
- 50S RIBOSOMAL PROTEIN L29
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