IL_2D3O_015

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2D3O|1|0|G|814, 2D3O|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_015 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.2231

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

2D3O|1|0|G|687
2D3O|1|0|A|688
2D3O|1|0|A|689
2D3O|1|0|A|690
2D3O|1|0|C|691
*
2D3O|1|0|G|812
2D3O|1|0|A|813
2D3O|1|0|G|814
2D3O|1|0|A|815
2D3O|1|0|U|816
2D3O|1|0|A|817
2D3O|1|0|G|818
2D3O|1|0|C|819

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains