IL_2D3O_057

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

2D3O|1|0|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_057 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.323

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2D3O|1|0|U|1426
2D3O|1|0|G|1427
2D3O|1|0|G|1428
2D3O|1|0|A|1429
2D3O|1|0|G|1430
*
2D3O|1|0|C|1598
2D3O|1|0|G|1599
2D3O|1|0|U|1600
2D3O|1|0|U|1601
2D3O|1|0|G|1602
2D3O|1|0|A|1603
2D3O|1|0|A|1604
2D3O|1|0|A|1605

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains