IL_2D3O_112

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUCC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUCC,GGAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_112 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2216

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

2D3O|1|0|C|2628
2D3O|1|0|U|2629
2D3O|1|0|C|2630
2D3O|1|0|C|2631
*
2D3O|1|0|G|2647
2D3O|1|0|G|2648
2D3O|1|0|A|2649
2D3O|1|0|G|2650

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains