IL_2D3O_133

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAGG*CCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_133 not in the Motif Atlas

Geometric match to IL_8C3A_405

Geometric discrepancy: 0.3181

The information below is about IL_8C3A_405

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

15

Unit IDs

2D3O|1|0|C|2033
2D3O|1|0|A|2034
2D3O|1|0|G|2035
2D3O|1|0|G|2036
*
2D3O|1|0|C|2595
2D3O|1|0|C|2596
2D3O|1|0|G|2597

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains