Motif IL_51387.1 Version IL_51387.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-7	2-3	2-6	3-6	4-5
1	IL_8P9A_284	8P9A	0.3548	1	Major groove platform with extra cWW (H)	AR	LSU rRNA	G	1262	G	1264	U	1265	G	1266	*	C	1275	U	1276	C	1277	cWW	cSH		cWw	cWW
2	IL_1MMS_002	1MMS	0.2958	1	Major groove platform with extra cWW	C	23S RIBOSOMAL RNA	G	1087	G	1089	U	1090	G	1091	*	C	1100	U	1101	C	1102	cWW	cSH		cWw	cWW
3	IL_5D8H_003	5D8H	0.2859	1	Major groove platform with extra cWW	A	LSU rRNA	G	1197	G	1199	U	1200	G	1201	*	C	1210	U	1211	C	1212	cWW	cSH		cWw	cWW
4	IL_4V9F_028	4V9F	0.1395	0	Major groove platform with extra cWW	0	LSU rRNA	G	830	U	831	U	832	G	833	*	C	849	U	850	C	851	cWW	cSH		cWw	cWW
5	IL_8P9A_259	8P9A	0.0904	0	Major groove platform with extra cWW (H)	AR	LSU rRNA	G	869	G	870	U	871	U	872	*	A	888	U	889	C	890	cWW	cSH		cWw	cWW
6	IL_9DFE_020	9DFE	0.0000	0	Major groove platform with extra cWW (H)	1A	LSU rRNA	G	738	G	739	U	740	G	741	*	C	756	U	757	C	758	cWW	cSH	ntSH	cWw	cWW
7	IL_7A0S_019	7A0S	0.0914	0	Major groove platform with extra cWW	X	LSU rRNA	G	751	G	752	U	753	G	754	*	C	769	U	770	C	771	cWW	cSH		cWw	cWW
8	IL_8C3A_405	8C3A	0.1680	1	Major groove platform with extra cWW	CM	SSU rRNA	U	257	U	259	U	260	C	261	*	G	202	U	203	A	204	cWW	cSH		cWw	cWW
9	IL_8P9A_386	8P9A	0.1613	1	Major groove platform with extra cWW (H)	sR	SSU rRNA	U	259	U	261	U	262	C	263	*	G	204	U	205	A	206	cWW	cSH		cWw	cWW
10	IL_8P9A_332	8P9A	0.3238	1	Major groove minor groove platform with extra cWW (H)	AR	LSU rRNA	U	2858	U	2859	U	2861	U	2862	*	G	2828	U	2829	G	2830	cWW	ncWH		cWw	cWW
11	IL_4V9F_084	4V9F	0.3539	1	Major groove minor groove platform with extra cWW	0	LSU rRNA	G	2524	G	2525	U	2527	U	2528	*	G	2494	U	2495	C	2496	cWW	cSH		cWw	cWW
12	IL_5J7L_337	5J7L	0.4071	1	Major groove minor groove platform with extra cWW	DA	LSU rRNA	U	2489	G	2490	U	2492	U	2493	*	A	2459	U	2460	A	2461	cWW	cSH		cWw	cWW
13	IL_9DFE_094	9DFE	0.3761	1	Major groove minor groove platform with extra cWW (H)	1A	LSU rRNA	G	2489	G	2490	U	2492	U	2493	*	A	2459	U	2460	C	2461	cWW	cSH		cWw	cWW
14	IL_4WF9_092	4WF9	0.3883	1	Major groove minor groove platform with extra cWW	X	LSU rRNA	G	2516	G	2517	U	2519	U	2520	*	A	2486	U	2487	C	2488	cWW	cSH		cWw	cWW
15	IL_7A0S_086	7A0S	0.3968	1	Major groove minor groove platform with extra cWW	X	LSU rRNA	G	2468	G	2469	U	2471	U	2472	*	A	2438	U	2439	C	2440	cWW	cSH	ncWB	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGUG*CUC	3
GGUUU*AUC	3
GGUG*CUC	2
UUUUC*GUA	2
GUUG*CUC	1
GGUU*AUC	1
UUUUU*GUG	1
GGCUU*GUC	1
UGUUU*AUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUU*U	4
AGU*U	3
GU*U	3
UUU*U	3
UU*U	1
GCU*U	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform with extra cWW (5)
Major groove minor groove platform with extra cWW (4)
Major groove platform with extra cWW (H) (4)
Major groove minor groove platform with extra cWW (H) (2)
Basepair signature: cWW-cSH-cWW-cWW
Heat map statistics: Min 0.09 | Avg 0.32 | Max 0.62

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Coloring options: Nucleotide numbers

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