RNA 3D Hub //

Motif IL_51387.1 Version IL_51387.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-63-64-5
1 IL_8P9A_2848P9A0.35481Major groove platform with extra cWW (H)AR LSU rRNAG1262G1264U1265G1266*C1275U1276C1277cWWcSHcWwcWW
2 IL_1MMS_0021MMS0.29581Major groove platform with extra cWWC23S RIBOSOMAL RNAG1087G1089U1090G1091*C1100U1101C1102cWWcSHcWwcWW
3 IL_5D8H_0035D8H0.28591Major groove platform with extra cWWA LSU rRNAG1197G1199U1200G1201*C1210U1211C1212cWWcSHcWwcWW
4 IL_4V9F_0284V9F0.13950Major groove platform with extra cWW0 LSU rRNAG830U831U832G833*C849U850C851cWWcSHcWwcWW
5 IL_8P9A_2598P9A0.09040Major groove platform with extra cWW (H)AR LSU rRNAG869G870U871U872*A888U889C890cWWcSHcWwcWW
6 IL_9DFE_0209DFE0.00000Major groove platform with extra cWW (H)1A LSU rRNAG738G739U740G741*C756U757C758cWWcSHntSHcWwcWW
7 IL_7A0S_0197A0S0.09140Major groove platform with extra cWWX LSU rRNAG751G752U753G754*C769U770C771cWWcSHcWwcWW
8 IL_8C3A_4058C3A0.16801Major groove platform with extra cWWCM SSU rRNAU257U259U260C261*G202U203A204cWWcSHcWwcWW
9 IL_8P9A_3868P9A0.16131Major groove platform with extra cWW (H)sR SSU rRNAU259U261U262C263*G204U205A206cWWcSHcWwcWW
10 IL_8P9A_3328P9A0.32381Major groove minor groove platform with extra cWW (H)AR LSU rRNAU2858U2859U2861U2862*G2828U2829G2830cWWncWHcWwcWW
11 IL_4V9F_0844V9F0.35391Major groove minor groove platform with extra cWW0 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
12 IL_5J7L_3375J7L0.40711Major groove minor groove platform with extra cWWDA LSU rRNAU2489G2490U2492U2493*A2459U2460A2461cWWcSHcWwcWW
13 IL_9DFE_0949DFE0.37611Major groove minor groove platform with extra cWW (H)1A LSU rRNAG2489G2490U2492U2493*A2459U2460C2461cWWcSHcWwcWW
14 IL_4WF9_0924WF90.38831Major groove minor groove platform with extra cWWX LSU rRNAG2516G2517U2519U2520*A2486U2487C2488cWWcSHcWwcWW
15 IL_7A0S_0867A0S0.39681Major groove minor groove platform with extra cWWX LSU rRNAG2468G2469U2471U2472*A2438U2439C2440cWWcSHncWBcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGUG*CUC3
GGUUU*AUC3
GGUG*CUC2
UUUUC*GUA2
GUUG*CUC1
GGUU*AUC1
UUUUU*GUG1
GGCUU*GUC1
UGUUU*AUA1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
AGU*U3
GU*U3
UUU*U3
UU*U1
GCU*U1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra cWW (5)
  • Major groove minor groove platform with extra cWW (4)
  • Major groove platform with extra cWW (H) (4)
  • Major groove minor groove platform with extra cWW (H) (2)
    • Basepair signature
    cWW-cSH-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.32 | Max 0.62
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    Coloring options:

    IL_8P9A_284:IL_8P9A_284 = 0IL_8P9A_284:IL_1MMS_002 = 0.1319IL_8P9A_284:IL_5D8H_003 = 0.1347IL_8P9A_284:IL_4V9F_028 = 0.3975IL_8P9A_284:IL_8P9A_259 = 0.361IL_8P9A_284:IL_9DFE_020 = 0.3548IL_8P9A_284:IL_7A0S_019 = 0.3285IL_8P9A_284:IL_8C3A_405 = 0.3199IL_8P9A_284:IL_8P9A_386 = 0.4017IL_8P9A_284:IL_8P9A_332 = 0.5234IL_8P9A_284:IL_4V9F_084 = 0.54IL_8P9A_284:IL_5J7L_337 = 0.604IL_8P9A_284:IL_9DFE_094 = 0.6181IL_8P9A_284:IL_4WF9_092 = 0.6202IL_8P9A_284:IL_7A0S_086 = 0.621IL_1MMS_002:IL_8P9A_284 = 0.1319IL_1MMS_002:IL_1MMS_002 = 0IL_1MMS_002:IL_5D8H_003 = 0.0852IL_1MMS_002:IL_4V9F_028 = 0.3196IL_1MMS_002:IL_8P9A_259 = 0.2949IL_1MMS_002:IL_9DFE_020 = 0.2958IL_1MMS_002:IL_7A0S_019 = 0.263IL_1MMS_002:IL_8C3A_405 = 0.2946IL_1MMS_002:IL_8P9A_386 = 0.3701IL_1MMS_002:IL_8P9A_332 = 0.4991IL_1MMS_002:IL_4V9F_084 = 0.4961IL_1MMS_002:IL_5J7L_337 = 0.5567IL_1MMS_002:IL_9DFE_094 = 0.561IL_1MMS_002:IL_4WF9_092 = 0.5605IL_1MMS_002:IL_7A0S_086 = 0.5569IL_5D8H_003:IL_8P9A_284 = 0.1347IL_5D8H_003:IL_1MMS_002 = 0.0852IL_5D8H_003:IL_5D8H_003 = 0IL_5D8H_003:IL_4V9F_028 = 0.3055IL_5D8H_003:IL_8P9A_259 = 0.2816IL_5D8H_003:IL_9DFE_020 = 0.2859IL_5D8H_003:IL_7A0S_019 = 0.2535IL_5D8H_003:IL_8C3A_405 = 0.2723IL_5D8H_003:IL_8P9A_386 = 0.3551IL_5D8H_003:IL_8P9A_332 = 0.4977IL_5D8H_003:IL_4V9F_084 = 0.5076IL_5D8H_003:IL_5J7L_337 = 0.5678IL_5D8H_003:IL_9DFE_094 = 0.5734IL_5D8H_003:IL_4WF9_092 = 0.5741IL_5D8H_003:IL_7A0S_086 = 0.5751IL_4V9F_028:IL_8P9A_284 = 0.3975IL_4V9F_028:IL_1MMS_002 = 0.3196IL_4V9F_028:IL_5D8H_003 = 0.3055IL_4V9F_028:IL_4V9F_028 = 0IL_4V9F_028:IL_8P9A_259 = 0.0975IL_4V9F_028:IL_9DFE_020 = 0.1395IL_4V9F_028:IL_7A0S_019 = 0.1339IL_4V9F_028:IL_8C3A_405 = 0.2451IL_4V9F_028:IL_8P9A_386 = 0.2355IL_4V9F_028:IL_8P9A_332 = 0.3866IL_4V9F_028:IL_4V9F_084 = 0.3668IL_4V9F_028:IL_5J7L_337 = 0.4202IL_4V9F_028:IL_9DFE_094 = 0.3888IL_4V9F_028:IL_4WF9_092 = 0.3866IL_4V9F_028:IL_7A0S_086 = 0.3988IL_8P9A_259:IL_8P9A_284 = 0.361IL_8P9A_259:IL_1MMS_002 = 0.2949IL_8P9A_259:IL_5D8H_003 = 0.2816IL_8P9A_259:IL_4V9F_028 = 0.0975IL_8P9A_259:IL_8P9A_259 = 0IL_8P9A_259:IL_9DFE_020 = 0.0904IL_8P9A_259:IL_7A0S_019 = 0.106IL_8P9A_259:IL_8C3A_405 = 0.208IL_8P9A_259:IL_8P9A_386 = 0.2086IL_8P9A_259:IL_8P9A_332 = 0.3541IL_8P9A_259:IL_4V9F_084 = 0.3571IL_8P9A_259:IL_5J7L_337 = 0.4209IL_8P9A_259:IL_9DFE_094 = 0.3836IL_8P9A_259:IL_4WF9_092 = 0.3939IL_8P9A_259:IL_7A0S_086 = 0.4049IL_9DFE_020:IL_8P9A_284 = 0.3548IL_9DFE_020:IL_1MMS_002 = 0.2958IL_9DFE_020:IL_5D8H_003 = 0.2859IL_9DFE_020:IL_4V9F_028 = 0.1395IL_9DFE_020:IL_8P9A_259 = 0.0904IL_9DFE_020:IL_9DFE_020 = 0IL_9DFE_020:IL_7A0S_019 = 0.0914IL_9DFE_020:IL_8C3A_405 = 0.168IL_9DFE_020:IL_8P9A_386 = 0.1613IL_9DFE_020:IL_8P9A_332 = 0.3238IL_9DFE_020:IL_4V9F_084 = 0.3539IL_9DFE_020:IL_5J7L_337 = 0.4071IL_9DFE_020:IL_9DFE_094 = 0.3761IL_9DFE_020:IL_4WF9_092 = 0.3883IL_9DFE_020:IL_7A0S_086 = 0.3968IL_7A0S_019:IL_8P9A_284 = 0.3285IL_7A0S_019:IL_1MMS_002 = 0.263IL_7A0S_019:IL_5D8H_003 = 0.2535IL_7A0S_019:IL_4V9F_028 = 0.1339IL_7A0S_019:IL_8P9A_259 = 0.106IL_7A0S_019:IL_9DFE_020 = 0.0914IL_7A0S_019:IL_7A0S_019 = 0IL_7A0S_019:IL_8C3A_405 = 0.1695IL_7A0S_019:IL_8P9A_386 = 0.1951IL_7A0S_019:IL_8P9A_332 = 0.3575IL_7A0S_019:IL_4V9F_084 = 0.3788IL_7A0S_019:IL_5J7L_337 = 0.4358IL_7A0S_019:IL_9DFE_094 = 0.4102IL_7A0S_019:IL_4WF9_092 = 0.4104IL_7A0S_019:IL_7A0S_086 = 0.4177IL_8C3A_405:IL_8P9A_284 = 0.3199IL_8C3A_405:IL_1MMS_002 = 0.2946IL_8C3A_405:IL_5D8H_003 = 0.2723IL_8C3A_405:IL_4V9F_028 = 0.2451IL_8C3A_405:IL_8P9A_259 = 0.208IL_8C3A_405:IL_9DFE_020 = 0.168IL_8C3A_405:IL_7A0S_019 = 0.1695IL_8C3A_405:IL_8C3A_405 = 0IL_8C3A_405:IL_8P9A_386 = 0.1603IL_8C3A_405:IL_8P9A_332 = 0.3215IL_8C3A_405:IL_4V9F_084 = 0.3989IL_8C3A_405:IL_5J7L_337 = 0.4762IL_8C3A_405:IL_9DFE_094 = 0.4552IL_8C3A_405:IL_4WF9_092 = 0.4608IL_8C3A_405:IL_7A0S_086 = 0.4701IL_8P9A_386:IL_8P9A_284 = 0.4017IL_8P9A_386:IL_1MMS_002 = 0.3701IL_8P9A_386:IL_5D8H_003 = 0.3551IL_8P9A_386:IL_4V9F_028 = 0.2355IL_8P9A_386:IL_8P9A_259 = 0.2086IL_8P9A_386:IL_9DFE_020 = 0.1613IL_8P9A_386:IL_7A0S_019 = 0.1951IL_8P9A_386:IL_8C3A_405 = 0.1603IL_8P9A_386:IL_8P9A_386 = 0IL_8P9A_386:IL_8P9A_332 = 0.2674IL_8P9A_386:IL_4V9F_084 = 0.3232IL_8P9A_386:IL_5J7L_337 = 0.3909IL_8P9A_386:IL_9DFE_094 = 0.3768IL_8P9A_386:IL_4WF9_092 = 0.383IL_8P9A_386:IL_7A0S_086 = 0.3996IL_8P9A_332:IL_8P9A_284 = 0.5234IL_8P9A_332:IL_1MMS_002 = 0.4991IL_8P9A_332:IL_5D8H_003 = 0.4977IL_8P9A_332:IL_4V9F_028 = 0.3866IL_8P9A_332:IL_8P9A_259 = 0.3541IL_8P9A_332:IL_9DFE_020 = 0.3238IL_8P9A_332:IL_7A0S_019 = 0.3575IL_8P9A_332:IL_8C3A_405 = 0.3215IL_8P9A_332:IL_8P9A_386 = 0.2674IL_8P9A_332:IL_8P9A_332 = 0IL_8P9A_332:IL_4V9F_084 = 0.2303IL_8P9A_332:IL_5J7L_337 = 0.3062IL_8P9A_332:IL_9DFE_094 = 0.2877IL_8P9A_332:IL_4WF9_092 = 0.3165IL_8P9A_332:IL_7A0S_086 = 0.3171IL_4V9F_084:IL_8P9A_284 = 0.54IL_4V9F_084:IL_1MMS_002 = 0.4961IL_4V9F_084:IL_5D8H_003 = 0.5076IL_4V9F_084:IL_4V9F_028 = 0.3668IL_4V9F_084:IL_8P9A_259 = 0.3571IL_4V9F_084:IL_9DFE_020 = 0.3539IL_4V9F_084:IL_7A0S_019 = 0.3788IL_4V9F_084:IL_8C3A_405 = 0.3989IL_4V9F_084:IL_8P9A_386 = 0.3232IL_4V9F_084:IL_8P9A_332 = 0.2303IL_4V9F_084:IL_4V9F_084 = 0IL_4V9F_084:IL_5J7L_337 = 0.1775IL_4V9F_084:IL_9DFE_094 = 0.1842IL_4V9F_084:IL_4WF9_092 = 0.1932IL_4V9F_084:IL_7A0S_086 = 0.2056IL_5J7L_337:IL_8P9A_284 = 0.604IL_5J7L_337:IL_1MMS_002 = 0.5567IL_5J7L_337:IL_5D8H_003 = 0.5678IL_5J7L_337:IL_4V9F_028 = 0.4202IL_5J7L_337:IL_8P9A_259 = 0.4209IL_5J7L_337:IL_9DFE_020 = 0.4071IL_5J7L_337:IL_7A0S_019 = 0.4358IL_5J7L_337:IL_8C3A_405 = 0.4762IL_5J7L_337:IL_8P9A_386 = 0.3909IL_5J7L_337:IL_8P9A_332 = 0.3062IL_5J7L_337:IL_4V9F_084 = 0.1775IL_5J7L_337:IL_5J7L_337 = 0IL_5J7L_337:IL_9DFE_094 = 0.1445IL_5J7L_337:IL_4WF9_092 = 0.1398IL_5J7L_337:IL_7A0S_086 = 0.1493IL_9DFE_094:IL_8P9A_284 = 0.6181IL_9DFE_094:IL_1MMS_002 = 0.561IL_9DFE_094:IL_5D8H_003 = 0.5734IL_9DFE_094:IL_4V9F_028 = 0.3888IL_9DFE_094:IL_8P9A_259 = 0.3836IL_9DFE_094:IL_9DFE_020 = 0.3761IL_9DFE_094:IL_7A0S_019 = 0.4102IL_9DFE_094:IL_8C3A_405 = 0.4552IL_9DFE_094:IL_8P9A_386 = 0.3768IL_9DFE_094:IL_8P9A_332 = 0.2877IL_9DFE_094:IL_4V9F_084 = 0.1842IL_9DFE_094:IL_5J7L_337 = 0.1445IL_9DFE_094:IL_9DFE_094 = 0IL_9DFE_094:IL_4WF9_092 = 0.1023IL_9DFE_094:IL_7A0S_086 = 0.112IL_4WF9_092:IL_8P9A_284 = 0.6202IL_4WF9_092:IL_1MMS_002 = 0.5605IL_4WF9_092:IL_5D8H_003 = 0.5741IL_4WF9_092:IL_4V9F_028 = 0.3866IL_4WF9_092:IL_8P9A_259 = 0.3939IL_4WF9_092:IL_9DFE_020 = 0.3883IL_4WF9_092:IL_7A0S_019 = 0.4104IL_4WF9_092:IL_8C3A_405 = 0.4608IL_4WF9_092:IL_8P9A_386 = 0.383IL_4WF9_092:IL_8P9A_332 = 0.3165IL_4WF9_092:IL_4V9F_084 = 0.1932IL_4WF9_092:IL_5J7L_337 = 0.1398IL_4WF9_092:IL_9DFE_094 = 0.1023IL_4WF9_092:IL_4WF9_092 = 0IL_4WF9_092:IL_7A0S_086 = 0.092IL_7A0S_086:IL_8P9A_284 = 0.621IL_7A0S_086:IL_1MMS_002 = 0.5569IL_7A0S_086:IL_5D8H_003 = 0.5751IL_7A0S_086:IL_4V9F_028 = 0.3988IL_7A0S_086:IL_8P9A_259 = 0.4049IL_7A0S_086:IL_9DFE_020 = 0.3968IL_7A0S_086:IL_7A0S_019 = 0.4177IL_7A0S_086:IL_8C3A_405 = 0.4701IL_7A0S_086:IL_8P9A_386 = 0.3996IL_7A0S_086:IL_8P9A_332 = 0.3171IL_7A0S_086:IL_4V9F_084 = 0.2056IL_7A0S_086:IL_5J7L_337 = 0.1493IL_7A0S_086:IL_9DFE_094 = 0.112IL_7A0S_086:IL_4WF9_092 = 0.092IL_7A0S_086:IL_7A0S_086 = 0IL_8P9A_284IL_1MMS_002IL_5D8H_003IL_4V9F_028IL_8P9A_259IL_9DFE_020IL_7A0S_019IL_8C3A_405IL_8P9A_386IL_8P9A_332IL_4V9F_084IL_5J7L_337IL_9DFE_094IL_4WF9_092IL_7A0S_086Discrepancy0.000.100.200.300.400.500.60
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