IL_8C3A_405

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8C3A|1|CM|U|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8C3A|1|CM|G|202
8C3A|1|CM|U|203
8C3A|1|CM|A|204
*
8C3A|1|CM|U|257
8C3A|1|CM|U|258
8C3A|1|CM|U|259
8C3A|1|CM|U|260
8C3A|1|CM|C|261

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CV

40S ribosomal protein S8