IL_2DER_002

3D structure

PDB id

2DER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2DER_002 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.13

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

2DER|1|D|G|51
2DER|1|D|G|52
2DER|1|D|G|53
*
2DER|1|D|C|61
2DER|1|D|C|62
2DER|1|D|C|63

Current chains

Chain D

tRNA

Nearby chains