IL_2E5L_052

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2E5L_052 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1043

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

2E5L|1|A|C|1303
2E5L|1|A|G|1304
2E5L|1|A|G|1305
2E5L|1|A|A|1306
2E5L|1|A|U|1307
2E5L|1|A|U|1308
*
2E5L|1|A|A|1329
2E5L|1|A|U|1330
2E5L|1|A|G|1331
2E5L|1|A|A|1332
2E5L|1|A|A|1333
2E5L|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain V

30S ribosomal protein Thx