IL_2FDT_007

3D structure

PDB id

2FDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a conserved RNA hairpin of eel LINE UnaL2

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2FDT_007 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.223

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

2FDT|4|A|A|7
2FDT|4|A|C|8
2FDT|4|A|G|9
*
2FDT|4|A|C|29
2FDT|4|A|U|30

Current chains

Chain A

36-mer

Nearby chains