2FDT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2FDT_020 | 1/A/16:22 | No text annotation | ||
| HL_2FDT_013 | 2/A/16:22 | No text annotation | geometric HL_3IGI_004 HL_04783.2 | |
| HL_2FDT_014 | 3/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_015 | 4/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_016 | 5/A/16:22 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_2FDT_017 | 6/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_007 | 7/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_018 | 8/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_019 | 9/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_010 | 10/A/16:22 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_2FDT_011 | 11/A/16:22 | GNRA related | geometric HL_5J7L_179 HL_04783.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2FDT_012 | No text annotation | ||
| HL_2FDT_001 | No text annotation | ||
| HL_2FDT_002 | No text annotation | ||
| HL_2FDT_003 | No text annotation | ||
| HL_2FDT_004 | No text annotation | ||
| HL_2FDT_005 | No text annotation | ||
| HL_2FDT_006 | No text annotation | ||
| HL_2FDT_008 | No text annotation | ||
| HL_2FDT_009 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2FDT_001 | 1/A/7:9, 1/A/29:30 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_2FDT_002 | 1/A/9:11, 1/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_003 | 2/A/7:9, 2/A/29:30 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_2FDT_004 | 2/A/9:11, 2/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_005 | 3/A/7:9, 3/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_006 | 3/A/9:11, 3/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_007 | 4/A/7:9, 4/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_008 | 4/A/9:11, 4/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_009 | 5/A/7:9, 5/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_010 | 5/A/9:11, 5/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_011 | 6/A/7:9, 6/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_012 | 6/A/9:11, 6/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_013 | 7/A/7:9, 7/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_014 | 7/A/9:11, 7/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_028 | 8/A/7:9, 8/A/29:30 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_2FDT_016 | 8/A/9:11, 8/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_017 | 9/A/7:9, 9/A/29:30 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_2FDT_018 | 9/A/9:11, 9/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_019 | 10/A/7:9, 10/A/29:30 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2FDT_020 | 10/A/9:11, 10/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
| IL_2FDT_030 | 11/A/7:9, 11/A/29:30 | No text annotation | ||
| IL_2FDT_022 | 11/A/9:11, 11/A/27:29 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2FDT_023 | Isolated non-canonical cWW contact | ||
| IL_2FDT_024 | Isolated non-canonical cWW pair | ||
| IL_2FDT_025 | Isolated non-canonical cWW pair | ||
| IL_2FDT_026 | Isolated non-canonical cWW contact | ||
| IL_2FDT_027 | Isolated non-canonical cWW pair | ||
| IL_2FDT_015 | No text annotation | ||
| IL_2FDT_029 | Isolated non-canonical cWW pair | ||
| IL_2FDT_021 | Isolated non-canonical cWW contact |
Valid loops
No loops found
Problematic loops
No problematic loops
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