IL_2HHH_029

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

2HHH|1|A|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0987

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

2HHH|1|A|G|646
2HHH|1|A|A|647
2HHH|1|A|G|648
2HHH|1|A|A|649
2HHH|1|A|G|650
*
2HHH|1|A|U|724
2HHH|1|A|G|725
2HHH|1|A|G|726
2HHH|1|A|U|727

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18