IL_2J28_004

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCAGGU*AAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_004 not in the Motif Atlas

Geometric match to IL_1MFQ_007

Geometric discrepancy: 0.1158

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

2J28|1|8|U|45
2J28|1|8|C|46
2J28|1|8|A|47
2J28|1|8|G|48
2J28|1|8|G|49
2J28|1|8|U|50
*
2J28|1|8|A|59
2J28|1|8|A|60
2J28|1|8|G|61
2J28|1|8|C|62
2J28|1|8|A|63
2J28|1|8|G|64

Current chains

Chain 8

4.5S SIGNAL RECOGNITION PARTICLE RNA

Nearby chains

Chain 9

SIGNAL RECOGNITION PARTICLE 54