IL_2J28_004
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UCAGGU*AAGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_004 not in the Motif Atlas
- Geometric match to IL_1MFQ_007
- Geometric discrepancy: 0.1158
- The information below is about IL_1MFQ_007
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2J28|1|8|U|45
2J28|1|8|C|46
2J28|1|8|A|47
2J28|1|8|G|48
2J28|1|8|G|49
2J28|1|8|U|50
*
2J28|1|8|A|59
2J28|1|8|A|60
2J28|1|8|G|61
2J28|1|8|C|62
2J28|1|8|A|63
2J28|1|8|G|64
Current chains
- Chain 8
- 4.5S SIGNAL RECOGNITION PARTICLE RNA
Nearby chains
- Chain 9
- SIGNAL RECOGNITION PARTICLE 54
Coloring options: