IL_2J28_009

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_009 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0914

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|A|C|71
2J28|1|A|G|72
2J28|1|A|A|73
2J28|1|A|U|74
2J28|1|A|G|75
2J28|1|A|G|76
2J28|1|A|U|77
2J28|1|A|A|78
2J28|1|A|G|79
*
2J28|1|A|C|97
2J28|1|A|G|98
2J28|1|A|A|99
2J28|1|A|G|100
2J28|1|A|A|101
2J28|1|A|G|102
2J28|1|A|U|103
2J28|1|A|A|104
2J28|1|A|G|105

Current chains

Chain A

5S RIBOSOMAL RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S RIBOSOMAL PROTEIN L16

Chain V

50S RIBOSOMAL PROTEIN L25