IL_2J28_022

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_022 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.0883

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

2J28|1|B|C|564
2J28|1|B|C|565
2J28|1|B|U|566
*
2J28|1|B|A|575
2J28|1|B|U|576
2J28|1|B|G|577

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain R

50S RIBOSOMAL PROTEIN L21