IL_2J28_025

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2J28|1|B|G|801, 2J28|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_025 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0726

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|674
2J28|1|B|A|675
2J28|1|B|A|676
2J28|1|B|A|677
2J28|1|B|C|678
*
2J28|1|B|G|799
2J28|1|B|A|800
2J28|1|B|G|801
2J28|1|B|A|802
2J28|1|B|U|803
2J28|1|B|A|804
2J28|1|B|G|805
2J28|1|B|C|806

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15