3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2J28_028 not in the Motif Atlas
Homologous match to IL_5J7L_263
Geometric discrepancy: 0.0932
The information below is about IL_5J7L_263
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

2J28|1|B|U|703
2J28|1|B|G|704
2J28|1|B|A|705
2J28|1|B|A|706
2J28|1|B|G|707
*
2J28|1|B|U|724
2J28|1|B|G|725
2J28|1|B|G|726
2J28|1|B|A|727
2J28|1|B|G|728

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain C
50S RIBOSOMAL PROTEIN L2

Coloring options:


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