IL_2J28_045
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_045 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1417
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
2J28|1|B|G|1038
2J28|1|B|A|1039
2J28|1|B|A|1040
2J28|1|B|G|1041
*
2J28|1|B|C|1114
2J28|1|B|G|1115
2J28|1|B|G|1116
2J28|1|B|C|1117
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain G
- 50S RIBOSOMAL PROTEIN L6
- Chain M
- 50S RIBOSOMAL PROTEIN L16
- Chain V
- 50S RIBOSOMAL PROTEIN L25
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