IL_2J28_046
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 2J28|1|B|A|1046
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_046 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1327
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
2J28|1|B|C|1043
2J28|1|B|C|1044
2J28|1|B|C|1045
2J28|1|B|A|1046
2J28|1|B|G|1047
2J28|1|B|A|1048
2J28|1|B|C|1049
2J28|1|B|A|1050
2J28|1|B|G|1051
*
2J28|1|B|U|1108
2J28|1|B|C|1109
2J28|1|B|G|1110
2J28|1|B|A|1111
2J28|1|B|G|1112
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain G
- 50S RIBOSOMAL PROTEIN L6
Coloring options: