IL_2J28_049

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

2J28|1|B|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_049 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.1511

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

2J28|1|B|C|1196
2J28|1|B|G|1197
2J28|1|B|U|1198
*
2J28|1|B|A|1247
2J28|1|B|G|1248
2J28|1|B|U|1249
2J28|1|B|G|1250

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Q

50S RIBOSOMAL PROTEIN L20