IL_2J28_059

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

2J28|1|B|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_059 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1502

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

2J28|1|B|G|1432
2J28|1|B|A|1433
2J28|1|B|A|1434
2J28|1|B|G|1435
*
2J28|1|B|C|1557
2J28|1|B|C|1558
2J28|1|B|U|1559
2J28|1|B|G|1560
2J28|1|B|C|1561

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains