IL_2J28_062
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_062 not in the Motif Atlas
- Homologous match to IL_5J7L_300
- Geometric discrepancy: 0.3359
- The information below is about IL_5J7L_300
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
2J28|1|B|U|1474
2J28|1|B|G|1475
2J28|1|B|U|1476
2J28|1|B|A|1477
2J28|1|B|G|1478
*
2J28|1|B|U|1513
2J28|1|B|G|1514
2J28|1|B|A|1515
2J28|1|B|G|1516
2J28|1|B|G|1517
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
No other chains within 10ÅColoring options: