IL_2J28_104

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_104 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2J28|1|B|C|2652
2J28|1|B|U|2653
2J28|1|B|A|2654
2J28|1|B|G|2655
2J28|1|B|U|2656
2J28|1|B|A|2657
2J28|1|B|C|2658
*
2J28|1|B|G|2663
2J28|1|B|G|2664
2J28|1|B|A|2665
2J28|1|B|C|2666
2J28|1|B|C|2667
2J28|1|B|G|2668

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L6