IL_2J28_108
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_108 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.081
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
2J28|1|B|G|2737
2J28|1|B|A|2738
2J28|1|B|U|2739
2J28|1|B|A|2740
2J28|1|B|A|2741
2J28|1|B|G|2742
*
2J28|1|B|C|2762
2J28|1|B|G|2763
2J28|1|B|A|2764
2J28|1|B|A|2765
2J28|1|B|A|2766
2J28|1|B|C|2767
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain G
- 50S RIBOSOMAL PROTEIN L6
- Chain J
- 50S RIBOSOMAL PROTEIN L13
Coloring options: