IL_2J28_110

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

2J28|1|B|A|2879

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_110 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.0822

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

2J28|1|B|G|2838
2J28|1|B|G|2839
*
2J28|1|B|U|2878
2J28|1|B|A|2879
2J28|1|B|C|2880

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L19