IL_2J28_112

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_112 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1693

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|U|2847
2J28|1|B|G|2848
2J28|1|B|U|2849
2J28|1|B|A|2850
2J28|1|B|A|2851
2J28|1|B|G|2852
*
2J28|1|B|U|2865
2J28|1|B|U|2866
2J28|1|B|G|2867
2J28|1|B|A|2868
2J28|1|B|G|2869

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L19