IL_2J28_114

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_114 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0582

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|1666
2J28|1|B|G|1667
2J28|1|B|A|1668
2J28|1|B|A|1669
2J28|1|B|C|1670
2J28|1|B|U|1671
2J28|1|B|A|1672
2J28|1|B|G|1673
2J28|1|B|G|1674
*
2J28|1|B|C|1990
2J28|1|B|U|1991
2J28|1|B|G|1992
2J28|1|B|U|1993
2J28|1|B|C|1994

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14