IL_2J28_115

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_115 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

2J28|1|B|U|1851
2J28|1|B|U|1852
2J28|1|B|A|1853
2J28|1|B|A|1854
2J28|1|B|U|1855
2J28|1|B|U|1856
2J28|1|B|G|1857
2J28|1|B|A|1858
2J28|1|B|U|1859
2J28|1|B|G|1860
*
2J28|1|B|U|1882
2J28|1|B|U|1883
2J28|1|B|G|1884
2J28|1|B|A|1885
2J28|1|B|U|1886
2J28|1|B|C|1887
2J28|1|B|G|1888
2J28|1|B|A|1889
2J28|1|B|A|1890
2J28|1|B|G|1891

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains