IL_2JL6_012

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

2JL6|1|A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_012 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1245

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2JL6|1|A|C|288
2JL6|1|A|A|289
2JL6|1|A|G|290
*
2JL6|1|A|U|350
2JL6|1|A|G|351
2JL6|1|A|G|352
2JL6|1|A|G|353

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains