IL_2JL6_034

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

2JL6|1|A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_034 not in the Motif Atlas

Geometric match to IL_7RQB_035

Geometric discrepancy: 0.0912

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

2JL6|1|A|C|994
2JL6|1|A|C|995
2JL6|1|A|A|996
*
2JL6|1|A|U|1159
2JL6|1|A|G|1160

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L30

Chain N

50S RIBOSOMAL PROTEIN L13

Chain U

50S RIBOSOMAL PROTEIN L20

Chain V

50S RIBOSOMAL PROTEIN L21