IL_2JL6_036

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_036 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

2JL6|1|A|C|1004
2JL6|1|A|C|1005
2JL6|1|A|C|1006
2JL6|1|A|C|1007
2JL6|1|A|C|1008
2JL6|1|A|A|1009
2JL6|1|A|A|1010
2JL6|1|A|G|1011
*
2JL6|1|A|C|1150
2JL6|1|A|G|1151

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L13

Chain U

50S RIBOSOMAL PROTEIN L20