IL_2JL6_039
3D structure
- PDB id
- 2JL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 2JL6|1|A|U|1026, 2JL6|1|A|A|1127, 2JL6|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2JL6_039 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.049
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
2JL6|1|A|G|1024
2JL6|1|A|G|1025
2JL6|1|A|U|1026
2JL6|1|A|A|1027
2JL6|1|A|A|1028
2JL6|1|A|A|1029
2JL6|1|A|G|1030
*
2JL6|1|A|C|1124
2JL6|1|A|G|1125
2JL6|1|A|A|1126
2JL6|1|A|A|1127
2JL6|1|A|A|1128
2JL6|1|A|A|1129
2JL6|1|A|U|1130
2JL6|1|A|G|1131
2JL6|1|A|A|1132
2JL6|1|A|U|1133
2JL6|1|A|C|1135
2JL6|1|A|G|1136
2JL6|1|A|G|1137
2JL6|1|A|G|1138
2JL6|1|A|G|1139
2JL6|1|A|C|1140
Current chains
- Chain A
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 9
- 50S RIBOSOMAL PROTEIN L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S RIBOSOMAL PROTEIN L3
- Chain N
- 50S RIBOSOMAL PROTEIN L13
- Chain Q
- 50S RIBOSOMAL PROTEIN L16
Coloring options: