IL_2JL6_043

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

2JL6|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_043 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.193

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

2JL6|1|A|G|1087
2JL6|1|A|A|1088
2JL6|1|A|G|1089
2JL6|1|A|U|1090
2JL6|1|A|G|1091
*
2JL6|1|A|C|1100
2JL6|1|A|U|1101
2JL6|1|A|C|1102

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain K

50S RIBOSOMAL PROTEIN L11

Chain Q

50S RIBOSOMAL PROTEIN L16