IL_2JL6_046

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2JL6|1|A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_046 not in the Motif Atlas

Geometric match to IL_7RQB_047

Geometric discrepancy: 0.1104

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

2JL6|1|A|C|1208
2JL6|1|A|G|1209
2JL6|1|A|A|1210
2JL6|1|A|U|1211
2JL6|1|A|G|1212
2JL6|1|A|A|1213
2JL6|1|A|A|1214
2JL6|1|A|G|1215
*
2JL6|1|A|U|1234
2JL6|1|A|G|1235
2JL6|1|A|G|1236
2JL6|1|A|A|1237
2JL6|1|A|G|1238

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L20