IL_2JL6_081

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGCCUG*CUGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_081 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3914

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|C|2105
2JL6|1|A|G|2106
2JL6|1|A|C|2107
2JL6|1|A|C|2108
2JL6|1|A|U|2109
2JL6|1|A|G|2110
*
2JL6|1|A|C|2179
2JL6|1|A|U|2180
2JL6|1|A|G|2181
2JL6|1|A|G|2182
2JL6|1|A|C|2183
2JL6|1|A|G|2184

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L1